National Repository of Grey Literature 48 records found  1 - 10nextend  jump to record: Search took 0.01 seconds. 
Application of RNA interference to studies on biology of termites
Žalmanová, Anna ; Hanus, Robert (advisor) ; Smýkal, Vlastimil (referee)
The RNA interference (RNAi) mechanism can be used to reduce the expression of a selected gene in an organism. This method, discovered in 1998, has become the "gold standard" in basic biological research with overlaps to applied research and gene therapy in human medicine. For many reasons, RNAi is a suitable tool for the studies on biology of insects. RNAi is endowed with high sequence specificity, low costs, and easy application also in non-model species. Termites (Isoptera) are very sensitive to RNAi and this method is widely used to understand their physiology and ontogeny. The use of RNAi also has a potential in applied termite research and a significant number of publications have focused on the development of RNAi techniques as non-chemical pesticides against economically important termite species. This bachelor thesis aims to give a broad overview of the existing research on termites that uses the RNAi method.
Optimalizace přípravy lipozomálních nosičů pro cílený transport terapeutických nukleových kyselin
Maráková, Ester
This bachelor thesis titled 'Optimization of the preparation of liposomal carriers for targeted transport of therapeutic nucleic acids' deals with the use of liposomal nanocarriers and the mechanism of RNA interference by means of siRNA in targeted therapy. The aim of this work was to optimize the preparation of complex of liposomes, polyethylene glycol and siRNA for further research, and to write an expert treatise of the issue. In the experimental part of this work, cationic liposomes were prepared from a mixture of lipids in a molar ratio of 20:50:10:20 (DODAG, DOPE, cholesterol, CPA·HCl), into which a control siRNA was encapsulated after their extrusion. Further, two types of polyethylene glycol, PEG2000 and PEG2120, were attached to the liposomal surface. The experimental part of this work consisted of three main experiments: monitoring the effect of encapsulated siRNA amount, monitoring the effect of PEGylation rate and a stability study of liposomes stored for 3 months. At the end of this work, selected samples of liposomes were imaged by scanning electron microscope. In each experiment, size, PDI and ζ potential were measured using dynamic light scattering. In the experiment, where the effect of volume of encapsulated siRNA was studied, we observed a slight increase in size with increasing amount of encapsulated siRNA. Based on results in the second-mentioned experiment, liposomes with the PEGylation rate of 5% containing PEG2000 and the PEGylation rate of 2% containing PEG2120 were selected for the stability study as well as phosphate-buffered saline (PBS) (the effect of PEGylation rate was also compared with samples prepared in 20 mM HEPES + 135 mM NaCl buffer). In a long-term storage study, we were able to demonstrate the potential of liposomes to be used as stable carriers for therapeutics. However, given that the structures of these complexes appeared to be disintegrated after 28 days, further optimization steps, like use of fast protein liquid chromatography (FPLC) or use of lipids with PEG already incorporated in their structure are needed in order to reduce the error rate.
Úloha Adenylát kinázy 1 v aktivaci a metabolismu imunitních buněk larev \kur{Drosophila melanogaster}
KAISLEROVÁ, Nikola
The aim of this thesis was to study the role of Adenylate kinase 1 (Ak1) in the immune system of Drosophila melanogaster larvae upon the infection by parasitoid wasp Leptopilina boulardi. Using the immune specific Ak1 RNA interference, it was analyzed the effect of Ak1 reduction on the immune response and viability of Drosophila. The importance of Ak1 was also evaluated within the metabolism of immune cells. It has been shown that Ak1 is crucial in energy metabolism of immune cells and important for the proper functioning of immune system.
Validation of mitochondrial localization and essentiality of prioritized proteins assigned to the tripartite attachment complex in the protozoan parasite Trypanosoma brucei
BITTNER, Jacqueline
During this thesis the localization of the prioritized proteins Tb927.11.13600, Tb927.11.14570, Tb927.4.840 and Tb927.6.4540 and their connection to the tripartite attachment complex of the protozoan parasite Trypanosoma brucei was examined to verify previous annotations found on the TrypTag database. Additionally, the essentiality of the prioritized proteins was evaluated.
Insights into the Evolutionary Conserved Mitochondrial Contact Site and Cristae Organization System in Trypaonsoma brucei Through RNA Interference
CADENA, Lawrence Rudy
This work aims to give insight into the evolution of the mitochondria by investigating novel properties of the evolutionary conserved mitochondrial contact site and cristae organization system complex within the Excavata clade using Trypanosoma brucei as our model. This study shows that this complex indeed contains diverse properties that are not present in the typically studied Opisthokonta clade: e.g. mammalian and yeast organisms.
Improvement of quality, function and transplantation outcomes of pancreatic islets using RNA interference
Kosinová, Lucie ; Kříž, Jan (advisor) ; Štechová, Kateřina (referee) ; Petrák, Ondřej (referee)
Transplantation of insulin producing tissue is the only therapeutic method so far allowing type 1 diabetic patients to achieve long-term independence of insulin administration. Transplantation of isolated pancreatic islets (PI) into liver represents a safer but less effective alternative to whole-organ transplantation. This is caused by a significant loss of transplanted islets within a short time after transplantation due to the instant blood-mediated inflammatory reaction (IBMIR). This reaction is triggered by molecules of tissue factor, abundantly expressed on the surface of PI cells. Tissue factor activates directly the coagulation pathway leading to platelet aggregation, complement activation, and infiltration of islet graft by leukocytes which results in a destruction of up to 60 % of transplanted tissue, and a formation of ischemic areas of downstream lying liver tissue. Tissue factor also stimulates angiogenesis which makes it necessary for revascularization of PI after transplantation. Inhibition of tissue factor gene in isolated PI using RNA interference provides an opportunity for short-term suppression of tissue factor expression, leading to protection of PI in the early post-transplantation period without hindering the connection of capillaries to the recipient vascular system later...
Interaction of influenza virus with cell defence mechanisms
Vochyánová, Klára ; Drda Morávková, Alena (advisor) ; Mikušová, Gabriela (referee)
Influenza virus infection is one of the most current problems nowadays. Its unique ability to strongly inhibit cell immune response on many different levels and its pandemic potential make it a subject of interest of many research groups. The Influenza virus uses mainly NS1 protein to inhibit the immune response. NS1 protein is able, on one hand, to bind RNA and mask it against recognition by cellular sensors and other proteins. On the other hand, NS1 protein possesses a catalytic domain. Using this domain it interacts with many cellular proteins, interferes with signal transduction and guarantees successful infection. NS1 protein is one of principal pathogenicity instruments of the Influenza virus and it deserves appropriate attention.
Study of the mechanism of posttranscriptional and transcriptional transgene silencing in tobacco BY-2 cell line
Čermák, Vojtěch ; Fischer, Lukáš (advisor) ; Moravec, Tomáš (referee)
The RNA interference is a mechanism, which allows cells to regulate their genes functions, to establish and maintain heterochromatin and to defend them against invasive nucleic acids. In plants, RNA interference is initiated by double-stranded RNA, which is processed by Dicer into small RNAs, usually 20-24nt long. These small RNAs form a complex with Argonaut protein that participates in different processes based on sequence complementarity. This complex can guide mRNA cleavage, translation blocking and chromatin modifications, resulting either into posttranscriptional silencing (by preventing translation of already existing mRNA, PTGS) or transcriptional silencing (by preventing transcription of mRNA, TGS). The first step of this thesis was to establish different ways of triggering PTGS and to evaluate their functionality and efficiency. The next step was a preparation of a system which would allow to study the transition from posttrancriptional to transcriptional silencing. These so called "indicator lines" should allow to observe the timing and dynamics of this process by utilizing fluorescent proteins. This system is also going to enable to evaluate, how different factors are involved in this process - one of the factors is RNA-dependent RNA polymerase 6 (RDR6) which plays an essential role in...
RNAi of the a subunit of human translation initiation factor 3 (eIF3).
Peclinovská, Lucie ; Stiborová, Marie (advisor) ; Martínková, Markéta (referee)
Translation initiation is the first step of protein synthesis that captures the flow of gene expression pathway in all living organisms. The advantage of regulation of gene expression at the level of translation initiation is that it allows for more rapid changes in the proteome and serves as the rate limiting step under certain conditions such as stress. This process is masterminded by many initiation factors. One of them, a multisubunit eukaryotic initiation factor 3 (eIF3), is a very efficient player in this field taking a part in the most of the initiation steps. The largest subunit of the eIF3 complex is called eIF3a p170 and TIF32 in mammals and yeast, respectively, and at least in yeast, it was shown to represent an essential constituent of the translational machinery. This work is based on all that has been learned about the eIF3a roles in translation initiation in the model organism of yeast Saccharomyces cerevisiae in effort to examine the degree of the functional conservation with its human ortholog. This is achieved by the RNAi-mediated knock-down of eIF3a in HeLa and HEK cell lines followed by variety of well established assays to monitor translational status of eIF3a depleted cells. In the first part, I describe optimization of the RNA interference protocol with respect to the choice...

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